Ph.D. Course
Master's Course
- Sim M, Lee J, Lee D, Kwon D, Kim J, TAMA: Improved metagenomic sequence classification through meta-analysis, BMC Bioinformatics, Accepted
- Lee J, Lee D, Sim M, Kwon D, Kim J, Ko Y, and Kim J, mySyntenyPortal: an application package to construct websites for synteny block analysis, BMC Bioinformatics, 19:216, doi: 10.1186/s12859-018-2219-x, 2018
- Kwon D, Lee D, Kim J, Lee J, Sim M, and Kim J, INTERSPIA: a web application for exploring the dynamics of protein-protein interactions among multiple species, Nucleic Acids Research, gky378, doi:10.1093/nar/gky378, 2018
- Lee D, Lim D, Kwon D, Kim J, Lee J, Sim M, Choi BH, Choi SG, and Kim J, Functional and evolutionary analysis of Korean bob-tailed native dog using whole-genome sequencing data, Scientific Reports, 7, 17303; doi:10.1038/s41598-017-17817-w, 2017
- Kim J, Kern E, Kim T, Sim M, Kim J, Kim Y, Park C, Nadler SA, and Park JK, Phylogenetic analysis of two Plectus mitochondrial genomes (Nematoda: Plectida) supports a sister group relationship between Plectida and Rhabditida within Chromadorea, Molecular Phylogenetics and Evolution, 107:90-102, 2017
- Lee J, Hong WY, Cho M, Sim M, Lee D, Ko Y, and Kim J, Synteny Portal: a web-based application portal for synteny block analysis, Nucleic Acids Research, 44(W1):W35-W40;doi:10.1093/nar/gkw310, 2016
- Yun S, Furlong M, Sim M, Cho M, Park S, Cho E, Reys-Alcaraz A, Hwang J, Kim J, and Seong J, Prevertebrate Local Gene Duplication Facilitated Expansion of the Neuropeptide GPCR Superfamily, Molecular Biology and Evolution, 32(11):2803-17, 2015
Master's Course
- Sim M, and Kim J, Metagenome assembly through clustering of next-generation sequencing data using protein sequences. Journal of Microbiological Methods, 109:180-187, 2015
- Seok H and Sim M, Lee D, and Kim J, A clustering method for next-generation sequences of bacterial genomes through multiomics data mapping. Genes & Genomics, 36(2):191-196, 2014